Piontkivska, H.: search on Z-Library

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1

Efficiencies of maximum likelihood methods of phylogenetic inferences when different substitution models are used

Helen Piontkivska

Journal:

Molecular Phylogenetics and Evolution

Year:

2004

Language:

english

File:

PDF, 146 KB

english, 2004

2

Interactive effects of salinity variation and exposure to ZnO nanoparticles on the innate immune system of a sentinel marine bivalve, Mytilus edulis

Wu, Fangli, Falfushynska, Halina, Dellwig, Olaf, Piontkivska, Helen, Sokolova, Inna M.

Journal:

Science of The Total Environment

Year:

2020

Language:

english

File:

PDF, 2.02 MB

english, 2020

3

Identification of surface epitopes associated with protection against highly immune-evasive VlsE-expressing Lyme disease spirochetes

Batool, Maliha, Caoili, Salvador Eugenio C., Dangott, Lawrence J., Gerasimov, Ekaterina, Ionov, Yurij, Piontkivska, Helen, Zelikovsky, Alex, Waghela, Suryakant D., Rogovskyy, Artem S.

Journal:

Infection and Immunity

Year:

2018

Language:

english

File:

PDF, 7.01 MB

english, 2018

4

Comparative Mitochondrial Genomics of Freshwater Mussels (Bivalvia: Unionoida) With Doubly Uniparental Inheritance of mtDNA: Gender-Specific Open Reading Frames and Putative Origins of Replication

Breton, S., Beaupre, H. D., Stewart, D. T., Piontkivska, H., Karmakar, M., Bogan, A. E., Blier, P. U., Hoeh, W. R.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.71 MB

english, 2009

5

Novel Protein Genes in Animal mtDNA: A New Sex Determination System in Freshwater Mussels (Bivalvia: Unionoida)?

Breton, S., Stewart, D. T., Shepardson, S., Trdan, R. J., Bogan, A. E., Chapman, E. G., Ruminas, A. J., Piontkivska, H., Hoeh, W. R.

Journal:

Molecular Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 1.48 MB

english, 2011

6

Coevolutionary Analysis Identifies Protein–Protein Interaction Sites between HIV-1 Reverse Transcriptase and Integrase

Hetti Arachchilage, Madara, Piontkivska, Helen

Journal:

Virus Evolution

Year:

2016

Language:

english

File:

PDF, 294 KB

english, 2016

7

Biomineralization-related specialization of hemocytes and mantle tissues of the Pacific oysters Crassostrea gigas

Ivanina, Anna V., Falfushynska, Halina I., Beniash, Elia, Piontkivska, Helen, Sokolova, Inna M.

Journal:

Journal of Experimental Biology

Year:

2017

Language:

english

File:

PDF, 2.62 MB

english, 2017

8

Interferons and viruses induce a novel truncated ACE2 isoform and not the full-length SARS-CoV-2 receptor

Onabajo, Olusegun O., Banday, A. Rouf, Stanifer, Megan L., Yan, Wusheng, Obajemu, Adeola, Santer, Deanna M., Florez-Vargas, Oscar, Piontkivska, Helen, Vargas, Joselin M., Ring, Timothy J., Kee, Carmon

Journal:

Nature Genetics

Year:

2020

File:

PDF, 19.81 MB

2020

9

Identification of novel light-induced genes in the suprachiasmatic nucleus

Veronica M Porterfield, Helen Piontkivska, Eric M Mintz

Journal:

BMC Neuroscience

Year:

2007

Language:

english

File:

PDF, 1.56 MB

english, 2007

10

Evolutionary analysis of glycosyl hydrolase family 28 (GH28) suggests lineage-specific expansions in necrotrophic fungal pathogens

Daniel D. Sprockett, Helen Piontkivska, Christopher B. Blackwood

Journal:

Year:

2011

Language:

english

File:

PDF, 550 KB

english, 2011

11

Stable G-quadruplex enabling sequences are selected against by the context-dependent codon bias

Arachchilage, Gayan Mirihana, Arachchilage, Madara Hetti, Venkataraman, Aparna, Piontkivska, Helen, Basu, Soumitra

Journal:

Year:

2019

Language:

english

File:

PDF, 6.32 MB

english, 2019

12

Comprehensive Immunological Evaluation Reveals Surprisingly Few Differences between Elite Controller and Progressor Mamu-B*17-Positive Simian Immunodeficiency Virus-Infected Rhesus Macaques

Maness, N. J., Yant, L. J., Chung, C., Loffredo, J. T., Friedrich, T. C., Piaskowski, S. M., Furlott, J., May, G. E., Soma, T., Leon, E. J., Wilson, N. A., Piontkivska, H., Hughes, A. L., Sidney, J.,

Journal:

Journal of Virology

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

13

Potential trade-offs between biomineralization and immunity revealed by shell properties and gene expression profiles of two closely related Crassostrea species

Ivanina, Anna V., Borah, Ballav M., Vogts, Angela, Malik, Ifra, Wu, Jingyao, Chin, Adam R., Almarza, Alejandro J., Kumta, Prashant, Piontkivska, Helen, Beniash, Elia, Sokolova, Inna M.

Journal:

Journal of Experimental Biology

Year:

2018

Language:

english

File:

PDF, 4.77 MB

english, 2018

14

Lipid-Protein Interactions for ECA1 an N-ANTH Domain Protein Involved in Stress Signaling in Plants

Putta, Priya, Creque, Emily, Piontkivska, Helen, Kooijman, Edgar E.

Journal:

Chemistry and Physics of Lipids

Year:

2020

File:

PDF, 6.12 MB

2020

15

Analysis of gene expression in prostate cancer epithelial and interstitial stromal cells using laser capture microdissection

Jennifer L Gregg, Kathleen E Brown, Eric M Mintz, Helen Piontkivska, Gail C Fraizer

Journal:

Year:

2010

Language:

english

File:

PDF, 1.26 MB

english, 2010

16

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - SNPMiner: A Domain-Specific Deep Web Mining Tool

Wang, Fan, Agrawal, Gagan, Jin, Ruoming, Piontkivska, Helen

Year:

2007

Language:

english

File:

PDF, 3.60 MB

english, 2007

17

[IEEE 2009 Ohio Collaborative Conference on Bioinformatics (OCCBIO) - Cleveland, Ohio, USA (2009.06.15-2009.06.17)] 2009 Ohio Collaborative Conference on Bioinformatics - HIV Evolution: Fast or Slow?

Piontkivska, Helen, Paul, Sinu

Year:

2009

Language:

english

File:

PDF, 136 KB

english, 2009

18

Purifying selection and birth-and-death evolution in the ubiquitin gene family

Nei, M, Rogozin, I B, Piontkivska, H

Journal:

Proceedings of the National Academy of Sciences

Year:

2000

Language:

english

File:

PDF, 214 KB

english, 2000

19

A Dominant Role for CD8+-T-Lymphocyte Selection in Simian Immunodeficiency Virus Sequence Variation

O'Connor, D. H., McDermott, A. B., Krebs, K. C., Dodds, E. J., Miller, J. E., Gonzalez, E. J., Jacoby, T. J., Yant, L., Piontkivska, H., Pantophlet, R., Burton, D. R., Rehrauer, W. M., Wilson, N., Hug

Journal:

Journal of Virology

Year:

2004

Language:

english

File:

PDF, 874 KB

english, 2004

20

Explaining Pathogenicity of Congenital Zika and Guillain–Barré Syndromes: Does Dysregulation of RNA Editing Play a Role?

Piontkivska, Helen, Plonski, Noel‐Marie, Miyamoto, Michael M., Wayne, Marta L.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.02 MB

english, 2019

21

Molecular Biomarkers of the Mitochondrial Quality Control Are Differently Affected by Hypoxia-Reoxygenation Stress in Marine Bivalves Crassostrea gigas and Mytilus edulis

Steffen, Jennifer B. M., Falfushynska, Halina I., Piontkivska, Helen, Sokolova, Inna M.

Journal:

Frontiers in Marine Science

Year:

2020

File:

PDF, 4.13 MB

2020

22

Molecular phylogenetics of Trypanosomatidae: contrasting results from 18S rRNA and protein phylogenies

Austin L Hughes, Helen Piontkivska

Journal:

Kinetoplastid Biology and Disease

Year:

2003

Language:

english

File:

PDF, 1.66 MB

english, 2003

23

Extreme primary and secondary protein structure variability in the chimeric male-transmitted cytochromecoxidase subunit II protein in freshwater mussels: Evidence for an elevated amino acid substitution rate in the face of domain-specific purifying selection

Eric G Chapman, Helen Piontkivska, Jennifer M Walker, Donald T Stewart, Jason P Curole, Walter R Hoeh

Journal:

BMC Evolutionary Biology

Year:

2008

Language:

english

File:

PDF, 1.14 MB

english, 2008

24

Molecular characterization and expression of a novel homolog of uncoupling protein 5 (UCP5) from the eastern oyster Crassostrea virginica (Bivalvia: Ostreidae)

Britt Kern, Anna V. Ivanina, Helen Piontkivska, Eugene P. Sokolov, Inna M. Sokolova

Journal:

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics

Year:

2009

Language:

english

File:

PDF, 1.17 MB

english, 2009

25

Pyganodon (Bivalvia: Unionoida: Unionidae) phylogenetics: A male- and female-transmitted mitochondrial DNA perspective

Hélène Doucet-Beaupré, Pierre U. Blier, Eric G. Chapman, Helen Piontkivska, France Dufresne, Bernard E. Sietman, Renee S. Mulcrone, Walter R. Hoeh

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 2.33 MB

english, 2012

26

[Science, Engineering, and Biology Informatics] Advances in Genomic Sequence Analysis and Pattern Discovery Volume 7 || R'MES: A Tool to Find Motifs with a Significantly Unexpected Frequency in Biological Sequences

Elnitski, Laura, Piontkivska, Helen, Welch, Lonnie R

Year:

2011

Language:

english

File:

PDF, 571 KB

english, 2011

27

Molecular Trajectories Leading to the Alternative Fates of Duplicate Genes

Marotta, Michael, Piontkivska, Helen, Tanaka, Hisashi, Shiu, Shin-Han

Journal:

Year:

2012

Language:

english

File:

PDF, 1.61 MB

english, 2012

28

Molecular characterization and mRNA expression of two key enzymes of hypoxia-sensing pathways in eastern oysters Crassostrea virginica (Gmelin): Hypoxia-inducible factor α (HIF-α) and HIF-prolyl hydroxylase (PHD)

Helen Piontkivska, J. Sook Chung, Anna V. Ivanina, Eugene P. Sokolov, Sirinart Techa, Inna M. Sokolova

Journal:

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics

Year:

2011

Language:

english

File:

PDF, 1.81 MB

english, 2011

29

Patterns of sequence evolution at epitopes for host antibodies and cytotoxic T-lymphocytes in human immunodeficiency virus type 1

Helen Piontkivska, Austin L. Hughes

Journal:

Year:

2006

Language:

english

File:

PDF, 278 KB

english, 2006

30

Discovery of novel targets for multi-epitope vaccines: Screening of HIV-1 genomes using association rule mining

Sinu Paul, Helen Piontkivska

Journal:

Year:

2009

Language:

english

File:

PDF, 834 KB

english, 2009

31

RNA editing by the host ADAR system affects the molecular evolution of the Zika virus

Piontkivska, Helen, Frederick, Madeline, Miyamoto, Michael M., Wayne, Marta L.

Journal:

Ecology and Evolution

Year:

2017

Language:

english

File:

PDF, 651 KB

english, 2017

32

A secondary structure within a human piRNA modulates its functionality

Balaratnam, Sumirtha, Hettiarachchilage, Madara, West, Nicole, Piontkivska, Helen, Basu, Soumitra

Journal:

Year:

2018

Language:

english

File:

PDF, 14.52 MB

english, 2018

33

Ionic Liquids Chemical Stress Triggers Sphingoid Base Accumulation in Aspergillus nidulans

Hartmann, Diego O., Piontkivska, Daryna, Moreira, Carlos J. S., Silva Pereira, Cristina

Journal:

Frontiers in Microbiology

Year:

2019

Language:

english

File:

PDF, 3.26 MB

english, 2019

34

Transcriptome-wide comparisons and virulence gene polymorphisms of host-associated genotypes of the cnidarian parasite Ceratonova shasta in salmonids

Alama-Bermejo, Gema, Meyer, Eli, Atkinson, Stephen D, Holzer, Astrid S, WiÅniewska, Monika M, KolÃsko, Martin, Bartholomew, Jerri L, Piontkivska, Helen

Journal:

Genome Biology and Evolution

Year:

2020

File:

PDF, 1.28 MB

2020

35

Population genomic analyses of the sea urchin Echinometra sp. EZ across an extreme environmental gradient

Ketchum, Remi N, Smith, Edward G, DeBiasse, Melissa B, Vaughan, Grace O, McParland, Dain, Leach, Whitney B, Al-Mansoori, Noura, Ryan, Joseph F, Burt, John A, Reitzel, Adam M, Piontkivska, Helen

Journal:

Genome Biology and Evolution

Year:

2020

File:

PDF, 1.10 MB

2020

36

Explaining Pathogenicity of Congenital Zika and Guillain–Barré Syndromes: Does Dysregulation of RNA Editing Play a Role?

Piontkivska, Helen, Plonski, Noel‐Marie, Miyamoto, Michael M., Wayne, Marta L.

Journal:

Year:

2019

File:

PDF, 1.02 MB

2019

37

Machine Learning Maps Research Needs in COVID-19 Literature

Doanvo, Anhvinh, Qian, Xiaolu, Ramjee, Divya, Piontkivska, Helen, Desai, Angel, Majumder, Maimuna

Journal:

Year:

2020

File:

PDF, 1.47 MB

2020

38

Functional diversification of the toll-like receptor gene family

Austin L. Hughes, Helen Piontkivska

Journal:

Year:

2008

Language:

english

File:

PDF, 261 KB

english, 2008

39

Nucleotide sequence polymorphism in circoviruses

Austin L. Hughes, Helen Piontkivska

Journal:

Infection, Genetics and Evolution

Year:

2008

Language:

english

File:

PDF, 239 KB

english, 2008

40

Retained duplications and deletions of CYP2C genes among catarrhine primates

Chaney, Morgan E., Piontkivska, Helen, Tosi, Anthony J.

Journal:

Molecular Phylogenetics and Evolution

Year:

2018

Language:

english

File:

PDF, 1.81 MB

english, 2018

41

Rapid fixation of a distinctive sequence motif in the 3′ noncoding region of the clade of West Nile virus invading North America

Austin L. Hughes, Helen Piontkivska, Ivo Foppa

Journal:

Year:

2007

Language:

english

File:

PDF, 941 KB

english, 2007

42

Ionic Liquids Chemical Stress Triggers Sphingoid Base Accumulation in Aspergillus nidulans

Hartmann, Diego O., Piontkivska, Daryna, Moreira, Carlos J. S., Silva Pereira, Cristina

Journal:

Frontiers in Microbiology

Year:

2019

File:

PDF, 3.26 MB

2019

43

DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size

Austin L Hughes, Helen Piontkivska

Journal:

BMC Evolutionary Biology

Year:

2005

Language:

english

File:

PDF, 235 KB

english, 2005

44

Multi-species sequence comparison reveals dynamic evolution of the elastin gene that has involved purifying selection and lineage-specific insertions/deletions

Helen Piontkivska, Yi Zhang, Eric D Green, NISC Comparative Sequencing Program, Laura Elnitski

Journal:

Year:

2004

Language:

english

File:

PDF, 1013 KB

english, 2004

45

Evolutionary Relationships Of Popenaias popeii and the Early Evolution Of Lampsiline Bivalves (Unionidae): Phylogenetic Analyses Of Dna and Amino Acid Sequences From F and M Mitochondrial Genomes

Chapman, Eric G., Gordon, Mark E., Walker, Jennifer M., Lang, Brian K., Campbell, David C., Watters, G. Thomas, Curole, Jason P., Piontkivska, Helen, Hoeh, Walter R.

Journal:

Year:

2008

Language:

english

File:

PDF, 485 KB

english, 2008

46

1042 Whole-exome sequencing of the patient with pyoderma gangrenosum

Nesterovitch, A., Piontkivska, H., Hoffman, M., Mercer, H., Glant, T., Tharp, M.

Journal:

The Journal of Investigative Dermatology

Year:

2018

Language:

english

File:

PDF, 204 KB

english, 2018

47

Evolutionary conservation of zinc finger transcription factor binding sites in promoters of genes co-expressed with WT1 in prostate cancer

Kurtis Eisermann, Sunpreet Tandon, Anton Bazarov, Adina Brett, Gail Fraizer, Helen Piontkivska

Journal:

Year:

2008

Language:

english

File:

PDF, 981 KB

english, 2008

48

Purifying selection and birth-and-death evolution in the ubiquitin gene family

Nei, M., Rogozin, I. B., Piontkivska, H.

Journal:

Proceedings of the National Academy of Sciences

Year:

2000

Language:

english

File:

PDF, 108 KB

english, 2000

49

Discovery of a New TLR Gene and Gene Expansion Event through Improved Desert Tortoise Genome Assembly with Chromosome-Scale Scaffolds

Dolby, Greer A, Morales, Matheo, Webster, Timothy H, DeNardo, Dale F, Wilson, Melissa A, Kusumi, Kenro, Piontkivska, Helen

Journal:

Genome Biology and Evolution

Year:

2020

File:

PDF, 932 KB

2020

50

Environmental kinetoplastid-like 18S rRNA sequences and phylogenetic relationships among Trypanosomatidae: Paraphyly of the genus Trypanosoma

Helen Piontkivska, Austin L. Hughes

Journal:

Molecular and Biochemical Parasitology

Year:

2005

Language:

english

File:

PDF, 272 KB

english, 2005

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